AflII

AflII cuts DNA at CTTAAG, leaving a 4-nucleotide 5′ overhang (TTAA). Its 6 bp site occurs about once every 4,096 bp of random sequence.

Recognition & cut site

C^TTAAG

Properties

Recognition site
CTTAAG
Cut site
C^TTAAG
Ends produced
5′ overhang
Overhang
TTAA (4 nt)
Site length
6 bp
Cuts on average
1 / 4,096 bp
Palindromic
Yes
Cuts within site
Yes (type II)

Sequence checker

Runs in your browser. Nothing is uploaded.

Related enzymes

Isoschizomers

same site, same cut
  • BfrI
  • BspTI
  • Bst98I
  • BstAFI
  • BstPZ740I
  • Esp4I
  • MspCI
  • Vha464I

Neoschizomers

same site, different cut position

None known.

Compatible ends

different site, matching overhang

None known.