AvrII

AvrII cuts DNA at CCTAGG, leaving a 4-nucleotide 5′ overhang (CTAG). Its 6 bp site occurs about once every 4,096 bp of random sequence.

Recognition & cut site

C^CTAGG

Properties

Recognition site
CCTAGG
Cut site
C^CTAGG
Ends produced
5′ overhang
Overhang
CTAG (4 nt)
Site length
6 bp
Cuts on average
1 / 4,096 bp
Palindromic
Yes
Cuts within site
Yes (type II)

Sequence checker

Runs in your browser. Nothing is uploaded.

Related enzymes

Isoschizomers

same site, same cut
  • AspA2I
  • AvrBII
  • BlnI
  • BspA2I
  • XmaJI

Neoschizomers

same site, different cut position

None known.

Compatible ends

different site, matching overhang